Ok, it is confusing to me. All of the perks that were not locked had a check mark next to them which made me think they were already enabled. Then out of curiosity I clicked on them and was able to enable them. Then the check marks disappeared. So I'm thinking the check mark system is working backwards.
Here are all of my saves so far today so you can see the progression.
Here are all of my saves so far today so you can see the progression.