Never mind about that; I got it all solved.I do still get a while bunch of error logs generated, which I hope you can have a look at:
Do you have any suggestions on how to go about that?Well, its still a mess, its just an organized mess now. For everything to really be fixed correctly, all the model files should be renamed, but I was NOT going to step into that mess!
There's a program called "The Rename" that allows you to rename all files of a ship at once, making the renaming much easier.
And since the inclusion of the Different Flags mod, we've modified pretty much all ships anyway,
so if we'd include the full Models\Ships folder in the Build 14 Alpha, it shouldn't increase the download size much.